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Publications

1.            Aime, M.C., Matheny, P.B., Henk, D.A., Frieders, E.M., Nilsson, R.H., Piepenbring, M., McLaughlin, D.J., Szabo, L.J., Begerow, D., Sampaio, J.P., Bauer, R., Weiss, M., Oberwinkler, F. and Hibbett, D.S. 2006. An overview of the higher-level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98: 896–905.

 

2.            Arnold, A. E., Henk, D. A., Eells, R. L., Lutzoni, F. and Vilgalys, R. 2007. Diversity and phylogenic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.  Mycologia 99: 185-206.

 

3.            Arnold, A. E. and Lutzoni, F. 2007. Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots? Ecology 88: 541-549.

 

4.            Bhattacharya, D., Reeb, V., Simon, D. and Lutzoni, F. 2005. Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA. BMC Evolutionary Biology 5: 68.

 

5.            Binder, M., Hibbett, D.S., Larsson, K.-H., Larsson, E. and Langer, E. 2005. The phylogenetic distribution of resupinate forms in the homobasidiomycetes. Systematics and Biodiversity 3: 113-157.

 

6.            Binder, M., Hibbett, D.S., Wang, Z. and Farnham, W. 2006. Evolutionary origins of Mycaureola dilseae, a basidiomycete pathogen of the subtidal red alga Dilsea carnosa. American Journal of Botany 93: 547-556.

 

7.            Binder, M. and Hibbett, D.S. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971-983.

 

8.            Blackwell, M., Hibbett, D.S., Taylor, J.W. and Spatafora, J.W. 2006. Research Coordination Networks: A Phylogeny for Kingdom Fungi (Deep Hypha). Mycologia 98: 829–837.

 

9.            Blanco-Dios, J.B., Wang, Z., Binder, M. and Hibbett, D.S. 2006. A new Sparassis from Spain described using morphological and molecular data. Mycological Research 110: 1227-1231.

 

10.        Bodensteiner, P., Binder, M., Agerer, R., Moncalvo, J.-M. and Hibbett, D.S. 2004. Phylogenetic diversity of cyphelloid forms in the homobasidiomycetes. Molecular Phylogenetics and Evolution 33: 501-515.

 

11.        Campbell, J., Volkmann-Kohlmeyer, B., Gräfenhan, Spatafora, J.W. and Kohlmeyer, J. 2005. Are-evaluation of Lulworthiales: relationships based on 18S and 28S rDNA. Mycological Research 109: 556-568.

 

12.        Castlebury, L.A., Rossman, A.Y., Sung, G.-H., Hyten, A.S. and Spatafora, J.W. 2004. Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus. Mycological Research 108: 864-872.

 

13.        Celio, G.J., Padamsee, M. Dentinger, B.T.M., Bauer, R. and McLaughlin, D. J. 2006. Assembling the Fungal Tree of Life: Constructing the Structural and Biochemical Database, Mycologia 98: 850–859.

 

14.        Celio, G.J., Padamsee, M. Dentinger, B.T.M., Josephson, K., Jenkinson, T.S., McLaughlin, E.G. and McLaughlin, D.J.  2007.  Septal pore apparatus and nuclear division of Auriscalpium vulgare. Mycologia 99: 644-654.

 

15.        Dai Y.C., Wang, Z. Binder, M. and Hibbett, D.S. 2006. Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes. Mycologia 98: 584-592.

 

16.        Dentinger, B.T.M. and McLaughlin, D.J. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia 98: 746-762.

 

17.        Desjardin, D. E., Wang, Z., Binder, M. and Hibbett, D.S. 2004. Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data. Mycologia 96: 1010-1014.

 

18.        Egger, K. N. and Hibbett, D.S. 2004. The evolutionary implications of reciprocal exploitation in mycorrhizas. Canadian Journal of Botany 82: 1110-1121.

 

19.        Frøslev, T. G., Matheny, P.B. and Hibbett, D.S. 2005. Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2 and ITS phylogenies. Molecular Phylogenetics and Evolution 37: 602-618.

 

20.        Geiser, D. Gueidan, M., Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Schoch, C. L., Tibell, L., Untereiner, W. A., Aptroot, A. and Lutzoni, F. 2006. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98: 1055–1066.

 

21.        Grigoriev, I.V., Cullen, D., Hibbett, D., Goodwin, S.B., Jeffries, T.W., Kubiek, C.P., Kuske, C., Magnuson, J., Martin, F., Spatafora, J.W., Tsang, A. and S. Baker.  2011.  Fueling the Future with Fungal Genomics.  Mycology 2 (3): 192-209.

 

22.        Gueidan, C., Roux, C. and Lutzoni, F.  Using multigene phylogenies to assess generic delineations in the family Verrucariaceae (Verrucariales, Ascomycota) and the evolution of key taxonomic traits.  2007.  Mycological Research 111: 1145-1168.

 

23.        Hane, J.K., Lowe, R.G.T., Solomon, P.S., Tan, K.-C., Schoch, C.L., Spatafora, J.W., Crous, P.W., Kodira, C., Birren, B.W., Torriani, S.F.F., McDonald, B.A. and R. P. Oliver.  2007. Dothideomycete-plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. The Plant Cell 19: 3347-3368.

 

24.        Hibbett, D.S. 2004. Trends in morphological evolution in homobasidiomycetes. Systematic Biology 53: 889-903.

 

25.        Hibbett, D.S., Nilsson, R.H., Snyder, M., Fonseca, M., Costanzo, J. and Shonfeld, M. 2005. Automated Phylogenetic Taxonomy: An Example in the Homobasidiomycetes (Mushroom- Forming Fungi). Systematic Biology 54: 660-668.

 

26.        Hibbett, D.S. Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T.Y., Kirk, P.M., Lucking, R., Lumbsch, H.T.,  Lutzoni, F.L., Matheny, P.B., McLaughlin, D.J., Powell, M.J., Redhead, S., Schoch, C.L.,  Spatafora, J.W., Stalpers, J.A., Vilgalys, R., Aime, M.C., Aptroot, A., Bauer, R., Begerow, D., Benny, G.L., Castlebury, L.A.,  Crous, P.W., Dai, Y.-C., Gams, W., Geiser, D.M., Griffith, G.W., Gueidan, C.,  Hawksworth, D.L.,  Hestmark, G., Hosaka, K., Humber, R.A., Hyde, K.D., Ironside, J.E., Koljag, U., Kurtzman, C.P., Larsson, K.-H., Lichtwardt, R., Longcore, J., Miadlikowska, J., Miller, A., Moncalvo, J.-M., Mozley-Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J.D., Roux, C., Ryvarden, L., Sampaio, J.P., Schußler, A., Sugiyama, J., Thorn, R.G., Tibell, L., Untereiner, W.A., Walker, C., Wang, Z., Weir, A., Weiss, M., White, M.M., Winka, K., Yao, Y.-J., and Zhang, N.  2007.  A higher-level phylogenetic classification of the Fungi.  Mycological Research 111: 509-547.

 

27.        Hibbett, D.S. After the gold rush, or before the flood? Evolutionary morphology of mushroom forming fungi (Agaricomycetes) in the early 21st century. 2007. Mycological Research 111: 1001-1018.

 

28.        Hibbett, D.S. A Phylogenetic overview of the Agaricomycotina. Mycologia 98: 917 925.

 

29.        Higgins, K.L., Arnold, A.E., Miadlikowska, J.M., Sarvate, S.D. and Lutzoni, F. 2006. Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Molecular Phylogenetics and Evolution 42: 543-555.

 

30.        Hofstetter, V., Miadlikowska, J., Kauff, F. and Lutzoni, F. 2007. Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: A case study of the Lecanoromycetes (Ascomycota). Molecular Phylogenetics and Evolution 44: 412-426.

 

31.        Hosaka, K., Bates, S.T., Beever, R.E., Castellano, M.A., Colgan, W. III, Domínguez, L.S., Nouhra, E.R., Geml, J., Giachini, A.J., Kenney, S.R., Simpson, N.B., Spatafora, J.W. and Trappe, J.M. Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders. Mycologia 98: 949-959.

 

32.        Idnurm, A., James, T.Y. and Vilgalys, R. Sex in the rest: mysterious mating in the Chytridiomycota and Zygomycota in: Sex in fungi: molecular determination and evolutionary implications (Joe Heitman, Jim Kronstad, John Taylor, and Lorna Casselton eds.).

 

33.        James, T.Y., Kauff, F., Schoch, C.L., Matheny, P.B., Hofstetter, V., Cox, C.J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J., Lumbsch, H.T., Rauhut, A., Reeb, V., Arnold, A.E., Amtoft, A., Stajich, J.E., Hosaka, K., Sung, G.-H., Johnson, D., O’Rourke, B., Crockett, M., Binder, M., Curtis, J.M., Slot, J.C., Wang, Z., Wilson, A.W., Schußler, A., Longcore, J.E., O’Donnell, K., Mozley-Standridge, S., Porter, D., Letcher, P.M., Powell, M.J., Taylor, J.W., White, M.M., Griffith, G.W., Davies, D.R., Humber, R.A., Morton, J.B., Sugiyama, J., Rossman, A.Y., Rogers, J.D., Pfister, D.H., Hewitt, D., Hansen, K., Hambleton, S., Shoemaker, R.A., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Spotts, R.A., Serdani, M., Crous, P.W., Hughes, K.W., Matsuura, K., Langer, E., Langer, G., Untereiner, W.A., Lucking, R., Budel, B., Geiser, D.M., Aptroot, A., Diederich, P., Schmitt, I., Schultz, M., Yahr, R., Hibbett, D.S., Lutzoni, F., McLaughlin, D.J., Spatafora, J.W. and Vilgalys, R. 2006. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443: 818-822.

 

34.        James, T.Y., Letcher, P. M. Longcore, J.E., Mozley-Standridge, S.E., Porter, D., Powell, M J. Griffith, GW. and Vilgalys, R. 2006. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia 98: 860- 871.

 

35.        James, T.Y. and Vilgalys, R. 2006. Amphibian chytridiomycosis as an emerging infectious disease of wildlife: what can we learn from the earliest diverging fungi? pp. 271-278 in: Molecular principles of fungal pathogenesis, J. Heitman, S.G. Filler, J.E. Edwards, Jr and A.P. Mitchell, eds. ASM Press, Washington, D.C.

 

36.        Kauff, F., Cox, C. and Lutzoni, F. 2007. WASABI: An Automated Sequence Processing System for Multi-Gene Phylogenies. Systematic Biology 56: 523-531.

 

37.        Kumar, T.K.A., Celio, G.J., Matheny, P.B., McLaughlin, D.J., Hibbett, D.S. and Manimohan, P. 2007. Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies. Mycological Research 111: 268-274.

 

38.        Letcher, P.M., Powell, M.J., Churchill, P.F., Chambers, J.G. 2006 Ultrastructural and molecular delineation of a new order, the Rhizophydiales (Chytridiomycota). Mycological Research 110: 898-915.

 

39.        Lutzoni, F., Kauff, F., Cox, C. J., McLaughlin, D., Celio, G., Dentinger, B., Padamsee, M., Hibbett, D., James, T.Y., Baloch, E., Grube, M., Reeb, V., Hofstetter, V., Schoch, C., Arnold, A. E., Miadlikowska, J., Spatafora, J., Johnson, D., Hambleton, S., Crockett, M., Shoemaker, R., Sung, G.-H., Lucking, R., Lumbsch, T., O'Donnell, K., Binder, M., Diederich, P., Ertz, D., Gueidan, C., Hansen, K., Harris, R. C., Hosaka, K., Lim, Y.-W., Matheny, B., Nishida, H., Pfister, D., Rogers, J., Rossman, A., Schmitt, I., Sipman, H., Stone, J., Sugiyama, J., Yahr, R. and Vilgalys, R. 2004. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480.

 

40.        McLaughlin, D.J., Hibbett, D.S., Lutzoni, F., Spatafora, J.W. and R. Vilgalys.  2009.  The Search for the Fungal Tree of Life.  Trends in Microbiology 17: 488-497.

 

41.        Martin, F., Cullen, D., Hibbett, D., Pisabarro, A., Spatafora, J.W., Baker, S. E. and I.V. Grigoriev.  2011.  Sequencing the Fungal Tree of Life.  New Phytologist 190: 818-821.

 

42.        Matheny, P.B. and Bougher, N.L. 2005. A new violet species of Inocybe (Agaricales) from urban and rural landscapes in Western Australia. Australasian Mycologist 24: 7-12.

 

43.        Matheny, P.B., Wang, Z., Binder, M., Curtis, J.M., Lim, Y.W., Henrik Nilsson, R., Hughes, K. W., Hofstetter, V., Ammirati, J.F., Schoch, C.L., Langer, E., Langer, G., McLaughlin, D.J., Wilson, A. W., Froslev, T., Ge, Z.W., Kerrigan, R.W., Slot, J.C., Yang, Z.L., Baroni, T.J., Fischer, M., Hosaka, K., Matsuura, K., Seidl, M.T., Vauras, J. and Hibbett, D.S. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Molecular Phylogenetics and Evolution 43: 430-451.

 

44.        Matheny, P.B., Curtis, J.M., Hofstetter, V., Aime, M.C., Moncalvo, J.-M., Ge, Z.W., Yang, Z.L., Slot, J.C., Ammirati, J., Baroni, T.J., Bougher, N.L., Hughes, K.W., Lodge, D.J., Kerrigan, R.W., Seidl, M.T., Aanen, D.K., DeNitis, M., Daniele, G.M., Desjardin, D., Kropp, B.R., Norvell, L.L., Parker, A., Vellinga, E.C., Vilgalys, R. and Hibbett, D.S. 2006. Major clades of Agaricales: a multi-locus phylogenetic overview. Mycologia 98: 984-997.

 

45.        Matheny, P.B., Gossman, J.A., Zalar, P., Arun, T., Kumar, K. and Hibbett, D.S. 2006. Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota. Canadian Journal of Botany 84: 1794-1805.

 

46.        McLaughlin, D.J., Hanson, Jr., R.W., Frieders, E.M., Swann, E.C. and Szabo, L.S. 2004. Mitosis in the yeast phase of Bennsingtonia yuccicola and Stibum vulgare and its phylogenetic implications. American Journal of. Botany 91: 808-815.

 

47.        Miadlikowska, J., Grube, M., Kauff, F., Hofstetter, V., Fraker, E., Reeb, V., Kukwa, M., Otalora, M. A. G., Rauhut, A., Hestmark, G., Timdal, I., Lendemer, J. C., Tripp, E., Stenroos, S., Brodo, I., Ertz, D., Lücking, R., Gueidan, C., Arnold, A. E., Scheidegger, C., Yahr, R., May, P., Permutter, G., Diederich, P., Hillis, D. M., Buck, W., Martinez, I., Hafellner, J., Robertson, C. and Lutzoni, F. 2006. Phylogenetic relationships within the Lecanoromycetes (Ascomycota) based on nuclear ribosomal and protein-coding genes. Mycologia 98: 1090-1103.

 

48.        Miadlikowska, J. and Lutzoni, F. 2004. Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota) based on ribosomal RNA small and large subunits. American Journal of Botany 91: 449-464.

 

49.        Moncalvo, J-M, Nilsson, R.H., Koster, B., Dunhmam, S.M., Bernauer, T., Matheny, P.B., Margaritescu, S., Weiß, M., Garnica, S., Danell, E., Langer, E., Langer, E., Larsson, E. and Larsson, K.-H. The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia 98: 937-948.

 

50.        Reeb, V., Lutzoni, F. and Roux, C. 2004. Contribution of RPB2 to multilocus phylogenetic studies of the Pezizomycotina (euascomycetes, Fungi) with special emphasis on the lichenforming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution 32: 1036-1060.

 

51.        Rhind, N. Chen, Z., Yassour, M., Thompson, D.A., Haas, B.J., Habib, N., Wapinski, I., Roy, S., Lin, M.F., Heiman, D.I., Young, S.K., Furuya, K., Guo, Y., Pidoux, A., Chen, H.M., Robbertse, B., Goldberg, J.M., Aoki, K., Bayne, E.H., Berlin, A.M., Desjardins, C.A., Dobbs, E., Dukaj, L., Fan, L., FitzGerald, M.G., French, C., Gujja, S., Hansen, K., Keifenheim, D., Levin, J.Z., Mosher, R.A., Müller, C.A., Pfiffner, J., Priest, M., Russ, C., Smialowska, A., Swoboda, P., Sykes, S.M., Vaughn, M., Vengrova, S., Yoder, R., Zeng, Q., Allshire, R., Baulcombe, D., Birren, B.W., Brown, W., Ekwall, K., Kellis, M., Leatherwood, J., Levin, H., Margalit, H., Martienssen, R., Nieduszynski, C.A., Spatafora, J.W., Friedman, N., Dalgaard, J.Z., Baumann, P., Niki, H., Regev, A. and C. Nusbaum.  2011.  Comparative Functional Genomics of Fission Yeasts.  Science 332: 930-936.

 

52.        Robbertse, B., Reeves, J.B., Schoch, C.L. and Spatafora, J.W. 2006. A phylogenomic analysis of the Ascomycota. Fungal Genetics and Biology 43: 715-725.

 

53.        Robbertse, Barbara; Yoder, Ryan J.; Boyd, Alex; Reeves, John; Spatafora, Joseph W. 2011. Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data [Internet]. Version 63. PLoS Currents: Tree of Life. 2011 Jan 4 [revised 2011 Feb 7]. Available from: http://knol.google.com/k/barbara-robbertse/hal-an-automated-pipeline-for/360ntevzg9rsn/1.

 

54.        Schoch, C.L., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Tsui, C.K.M. and Spatafora, J.W. 2006. Glomeroblus gelineus is a member of the Ostropales. Mycological Research 110: 257-263.

 

55.        Schoch, C.L., Sung, G.-H., Volkmann-Kohlmeyer, B., Kohlmeyer, J. and Spatafora, J.W.  2007. Novel marine fungal lineages in the Hypocreomycetidae. Mycological Research 111: 154-162.

 

56.        Schoch, C.L., Shoemaker, R.A., Hambleton, S., Seifert, K.A., Spatafora, J.W. and Crous, P. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 98: 1043-1054.

 

57.        Schoch, C.L., Sung, G.-H., López-Giráldez, F., Townsend, J.P., Miadlikowska, J., Hofstetter, V., Robbertse, B., Matheny, P.B., Kauff, F., Wang, Z., Andrie, R., Trippe, K., Ciuffetti, L., Amtoft, A., Fraker, E., Hodkinson, B.P., Bonito, G., Lutzoni, F., Groenewald, J.Z., Arzanlou, M., de Hoog, S., Crous, P.W., Hewitt, D., Pfister, D.H., Peterson, K., Gryzenhout, M., Wingfield, M.J., Aptroot, A., Suh, S.-O., Blackwell, M., Hillis, D.M., Griffith, G., Castlebury, L., Rossman, A., Lumbsch, H.T., Lücking, R., Diederich, P., Ertz, D., Geiser, D., Hosaka, K., Inderbitzin, P., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Mostert, L., O’Donnell, K., Rogers, J., Shoemaker, R., Sugiyama, J., Summerbell, R., Untereiner, W., Johnston, P., Stenroos, S., Zuccaro, A., Dyer, P., Crittenden, P., Trappe, J.M. and J.W. Spatafora.  2009. The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits.  Systematic Biology 58: 224-239.

 

58.        Schoch, C.L., Wang, Z., Townsend, J.P. and J.W. Spatafora. 2009. Geoglossomycetes cl. nov., Geoglossales ord. nov and Taxa above Class Rank in the Ascomycota Tree of Life. Persoonia 22: 129-138.

 

59.        Sharanowski, B.J., Robbertse, B., Walker, J.,Voss, S.R., Yoder, R.,, Spatafora, J.W. and M. J. Sharkey. 2010. Expressed sequence tags reveal Proctotrupomorpha (minus Chalcidoidea) as sister to Aculeata (Hymenoptera: Insecta). Molecular Phylogenetics and Evolution 57: 101-112.

 

60.        Spatafora, J.W., Johnson, D., Sung, G.-H., Hosaka, K., O’Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Fraker, E., Gueidan, C., Miadlikowska, J., Reeb, V., Lumbsch, T., Lucking, R., Schmitt, I., Aptroot, A., Roux, C., Miller, A., Geiser, D., J., H., Hestmark, G., Arnold, A.E., Bu¨ del, B., Rauhut, A., Hewitt, D., Untereiner, W.A., Cole, M. S., Scheidegger, C., Schultz, M., Sipman, H. and Schoch, C.L. A five-gene phylogenetic analysis of the Pezizomycotina. Mycologia 98: 1020-1030.

 

61.        Stajich, J.E., Berbee, M.L., Blackwell, M., Hibbett, D.S., James, T.Y., Spatafora, J.W. and J. W. Taylor.  2009.  Primer: The Fungi.  Current Biology 19: R840-R845.

 

62.        Sugiyama, J., Hosaka, K. and Suh, S.-O. 2006. Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas. Mycologia 98: 998-1007.

 

63.        Suh, S.-O., Blackwell, M., Kurtzman, C.P. and Lachance, M.-A. 2006. Phylogenetics of Saccharomycetales, the ascomycete yeasts. Mycologia 98: 1008-1019.

 

64.        Sung, G.-H., J.-M. Sung, N.L. Hywel-Jones and J.W. Spatafora. 2007. A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach. Molecular Phylogenetics and Evolution 44: 1204-1223.

 

65.        Taylor, J.W and Berbee, M.L. 2006 Dating divergences in the Fungal Tree of Life: review and new analyses. Mycologia 98: 838-849.

 

66.        Thrash, J.C., Boyd, A., Huggett, M.J., Grote, J., Carini, P., Yoder, R.J., Robbertse, B., Spatafora, J.W., Rappé, M.S., and S.J. Giovannoni.  2011.  Phylogenetic evidence for a common ancestor of mitochondria and the SAR11 clade.  Scientific Reports. 1: doi:10.1038/srep00013.

 

67.        Vilgalys, R. (2003). Taxonomic misidentification in public DNA databases. New Phytologist 160: 4-5.

 

68.        Wang, Z., Binder, M., Dai, Y.-C. and Hibbett, D.S. 2004. Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and a protein-coding gene (rpb2). Mycologia 96: 1013-1027.

 

69.        Wang, Z., Binder, M. and Hibbett, D.S. 2005. Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological and molecular studies. American Journal of Botany 92: 1565-1574.

 

70.        Wang, Z., Binder, M., Schoch, C.L., Johnston, P.R., Spatafora, J.W. and Hibbett, D.S. 2006. Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny. Molecular Phylogenetics and Evolution 41: 295-312.

 

71.        Wang Z., Johnston, P.R., Takamatsu, S., Spatafora, J.W. and Hibbett, D.S. 2006. Phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98: 1067–1077.

 

72.        White, M.M., James, T.Y., O’Donnell, K. Cafaro, M.J., Tanabe, Y. and Sugiyama, J. 2006. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98: 872-884.

 

73.        Yang, Z.-L., Matheny, P.B., Ge, Z. and Hibbett, D.S. 2005. New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycological Research 109: 1259-1267.

 

74.        Zhang, N., Castlebury, L.A,, Miller, A.N., Hunhdorf, S.M., Schoch, C.L., Seifert, K.A., Rossman, A.Y., Rogers, J.D., Kohlmeyer, J., Volkmann-Kohlmeyer, B. and Sung, G.-H. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98: 1078-1089.